Welcome to transcription_pipeline’s documentation!

Pipelines (root-level classes)

• transcription_pipeline
  • transcription_pipeline package
    • Subpackages
    • Submodules
    • transcription_pipeline.nuclear_pipeline module
    • transcription_pipeline.preprocessing_pipeline module
    • transcription_pipeline.spot_pipeline module
    • Module contents

Subpackages

Data import and preprocessing:

• transcription_pipeline.preprocessing package
  • Submodules
  • transcription_pipeline.preprocessing.import_data module
  • transcription_pipeline.preprocessing.process_metadata module
  • Module contents

Tracking:

• transcription_pipeline.tracking package
  • Submodules
  • transcription_pipeline.tracking.detect_mitosis module
  • transcription_pipeline.tracking.stitch_tracks module
  • transcription_pipeline.tracking.track_features module
  • Module contents

Nuclear analysis:

• transcription_pipeline.nuclear_analysis package
  • Submodules
  • transcription_pipeline.nuclear_analysis.segmentation module
  • Module contents

Spot analysis:

• transcription_pipeline.spot_analysis package
  • Submodules
  • transcription_pipeline.spot_analysis.compile_data module
  • transcription_pipeline.spot_analysis.detection module
  • transcription_pipeline.spot_analysis.fitting module
  • transcription_pipeline.spot_analysis.refine_traces module
  • transcription_pipeline.spot_analysis.track_filtering module
  • transcription_pipeline.spot_analysis.fluctuation_correlation module
  • transcription_pipeline.spot_analysis.smMS2_calibration module
  • Module contents

Utilities:

• transcription_pipeline.utils package
  • Submodules
  • transcription_pipeline.utils.image_histogram module
  • transcription_pipeline.utils.label_manipulation module
  • transcription_pipeline.utils.neighborhood_manipulation module
  • transcription_pipeline.utils.parallel_computing module
  • transcription_pipeline.utils.plottable module
  • Module contents

Indices and tables

• Index

• Module Index

• Search Page